PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016536
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 344aa    MW: 37371.6 Da    PI: 4.7906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016536genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498e-16218254135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  PGSC0003DMP400016536 218 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 254
                           **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-680115IPR010399Tify domain
PROSITE profilePS5132012.36980115IPR010399Tify domain
PfamPF062005.0E-984114IPR010399Tify domain
PfamPF062039.4E-15145186IPR010402CCT domain
PROSITE profilePS5101712.689145187IPR010402CCT domain
SuperFamilySSF577163.33E-11211264No hitNo description
SMARTSM004012.1E-11212265IPR000679Zinc finger, GATA-type
CDDcd002022.39E-15217260No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13217259IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
PfamPF003209.1E-14218254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAENPRPLQA RPYEDHAPLP SIRMVEEEEE EEDDDDGAYE DDGGEETMDE AEDVSMKVLN  60
HHQYGGQSQQ LYGGGGGVVE VSRTSELTLA FEGEVYVFPA VTPDKVQAVL LLLGGCDIPT  120
AVPTVELPFD NKVEDLPKQA NLSKRFASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK  180
NGQFASLKSS SGSSSCDSAK SSLEGYGTQH SVTVPGKCHH CGVSENCTPA MRRGPDGPRT  240
LCNACGLKWA NKGTLRDLSK AGRKTSVEPN ELGTPDNPVK AFAEGSLDHC ADLEKNLFSS  300
GSNLENDIPV GIFSSSSNLV EQETLVGFGN ASKTEVVIPA NFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-135HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338034.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL76e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLM1AJN60.0M1AJN6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242070.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-60ZIM-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]